NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123348_10000030

Scaffold Ga0123348_10000030


Overview

Basic Information
Taxon OID3300012979 Open in IMG/M
Scaffold IDGa0123348_10000030 Open in IMG/M
Source Dataset NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)94806
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (21.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location NamePoint Reyes National Seashore, California, USA
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051210Metagenome / Metatranscriptome144Y
F071326Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0123348_1000003030F051210N/AMNTPAMSEMLLHGSVSVADAKNRANEYAKMFSRNDEMMEGVYNSQPSLLDKAFPGYYSQKTFSGYSETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTNMRSIIPNLGPDNYQDIQTMGGFTTEISPSTDNAVKDYQVITGRKIIPGTVRVKVADGNNSYELVDDGKGSLMAIANKITSSEINYLTGTVKFTVVANPASTGTITIIGKEDTTGTPCNTNGASNSHANDKRVIAKMQQTGLNTVPDMLVAEYNIASLGALKKATNTDMATFLFTKLRELYTKCINYKLVSTLEEGYTGDTMGTTANGFSLAAAAISGQFYDYRSRVDLFDAFLIDVEAALAQKAVKGVNITAFVAGAKASNHFQKGGMIGKFEKNTKISYINDLIGWYDGIPVLRSTDINENEADGSDAVFYAIHKTPDGQMAPLARGIYMPLTDTPTIGNYANPTQMAAGIYYQEGTKMLAPELVQRVAFKSGI*
Ga0123348_1000003049F071326AGGMSAENMASKTLDKANQLYTIGAKNIKFLKTVKGTDFVVLRPKDNSKWKNVFGGSYSSDSTLENDYEQFTTTLILELSDMRDVWNRNRDIIQTITDDDSLQVGDELQYTRDKITYRFKIIQKSSFSEAAKVIFQYTLSSIVETLDE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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