NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123349_10027722

Scaffold Ga0123349_10027722


Overview

Basic Information
Taxon OID3300012983 Open in IMG/M
Scaffold IDGa0123349_10027722 Open in IMG/M
Source Dataset NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3942
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location NamePoint Reyes National Seashore, California, USA
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057003Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0123349_100277223F057003N/AMANFIDLSNITYCGKEAQEIFSKDIYDIDMRQYGITFMDGVKGKMKLYTGEIGDAWQLYTCPFTPAGSASLAEAFIEPSAIKVNQENCFDTFWNTFLVDQTEISLRGGIPQTFGEWYFGKLRQKMSKEYQEIFWGGDTARTATTKVYLKAADGVEKQLHANTGVTKVEASAFTVDNAIAQVEAIIMKGLEVANAAEVDTEGYKLFMNHNDLRVLEVALGKVCCPNSVNQVFANWGRENGRIYVMGFEIVPSMISKGKMIFGPARNLVLGYDTFDSHLEYKLINLRDTTGDNMFRVIAISNIAVGIILPELFVLAE*
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