Scaffold Ga0123349_10107196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0123349_10107196

Scaffold Ga0123349_10107196

Overview

Basic Information
Taxon OID	3300012983 Open in IMG/M
Scaffold ID	Ga0123349_10107196 Open in IMG/M
Source Dataset Name	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1919
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Source Dataset Sampling Location
Location Name	Point Reyes National Seashore, California, USA
Coordinates	Lat. (^o)	38.04	Long. (^o)	-122.5	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088017	Metagenome	109	Y
F096242	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123349_101071963	F096242	AGGA	MLLKLIKTRQFISGSHCEVWEINHLTGNRLLGEVFVLNEHLPLELIYRVTVTRSGICFAGRHCGWMWECERLETAVTEYLKVIQECREEIRIEVCEPEPDLPGYPEVDYNPDDYPIVFCE
Ga0123349_101071965	F088017	GGAGG	MKKDSFEVIWEFLAPDEQQFGNRKEACRRLWSTIPIPKQRQIYATLFWQREQKIEIEANPYFAISHCKPRPFNYNGSSVSLPNDTKLFIAKYGEHYGVYSKLDTEAFEMQDRKAFN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.