NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164304_10819509

Scaffold Ga0164304_10819509


Overview

Basic Information
Taxon OID3300012986 Open in IMG/M
Scaffold IDGa0164304_10819509 Open in IMG/M
Source Dataset NameSoil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002475Metagenome / Metatranscriptome556Y
F003418Metagenome / Metatranscriptome488Y
F025580Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0164304_108195091F025580N/AITSSDPQRGGRPDWPDGSPELTSGEGIFVEELHAELGRRGITVRVGGETHAIPGHDEAVQRAGLESVLEHRDA*
Ga0164304_108195092F002475GGAGMRDERSYRVALVADCYVNPEPGQLDGLAMLAAAGWGVMQLPDDRYPAEVARPLLAEVAEQVEEFTRRGYGFVLVGERDGLAEALALVGVALPDRIVPASPAELREFLAVQPVPSALDAVSDRPEQAATAAPE*
Ga0164304_108195093F003418N/APALYVTATRSADIEASERTGTFWRVDTDAAGGLELIPGRL*
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