NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164307_10062936

Scaffold Ga0164307_10062936


Overview

Basic Information
Taxon OID3300012987 Open in IMG/M
Scaffold IDGa0164307_10062936 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016890Metagenome / Metatranscriptome244Y
F030272Metagenome / Metatranscriptome186Y
F079284Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0164307_100629362F079284GGAGGMNWIGEYIIDSSGQCCWHEGLRIQDEPMKAAYRGNVLVEFIIETSAIMGVKVGIA*
Ga0164307_100629363F030272GAGGVNKKIFSFAIAALMLAVTLVLFSQTSSQFPELDKNGKPVLPRPMPHVVYSPADLGHSGVAMAASVGALTPNTAVIRLGDATKMTVFTNCSQSFDLLMNVYTADDQNQSNPNFTLYNSYIIATGITAGAQQAFLASELAPTVTTGALGAPVRLPQLAVSFFERNVTAVAATCTDRVIVGY*
Ga0164307_100629364F016890N/AMARHAYKQAYETAKLELLQQLQKRDRIDQEIRKLKETLKPLGQLCGADPEEIDKLLLVEGFAVDSPLGFTDAIRRLFRIHKTPLHPTEIREDLLRMGIGREQVNLLSSIHTVLRRMVEG
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