Scaffold Ga0159060_1020012

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0159060_1020012

Scaffold Ga0159060_1020012

Overview

Basic Information
Taxon OID	3300012990 Open in IMG/M
Scaffold ID	Ga0159060_1020012 Open in IMG/M
Source Dataset Name	Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1718
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Micropepsales → Micropepsaceae → Rhizomicrobium → unclassified Rhizomicrobium → Rhizomicrobium sp. SCGC AG-212-E05	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Source Dataset Sampling Location
Location Name	Canada: Alberta
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0159060_10200124	F016064	N/A	MTEPSIRREAAEYRGYSLRVTFDRPQWQVIIAPLLLDRPQLAAGKQTVKGWDEDETVKRAKMRIDLLIESPSLN*

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