Scaffold Ga0157361_1000881

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157361_1000881

Scaffold Ga0157361_1000881

Overview

Basic Information
Taxon OID	3300012995 Open in IMG/M
Scaffold ID	Ga0157361_1000881 Open in IMG/M
Source Dataset Name	Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10829
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location Name	Brazil: Ribeir?o Preto, State of S?o Paulo
Coordinates	Lat. (^o)	-21.168	Long. (^o)	-47.846	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007675	Metagenome	346	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157361_10008814	F007675	N/A	MQILLSLTIQAIVLIYGQIFSDTVWNLNIEGMIGAQSRSYLYGVPKMSTFIYCNKLTSRIISKLLMGLTTLNQALIHTPTPNLIGVIRSESMISQAFQVCYSIKGYLSDRCVLSHERIGYIVEHIYQLNLSPRSPLTHSRESHLQPQELLRRQGPRRLPYQSSL*

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