NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157359_1085099

Scaffold Ga0157359_1085099


Overview

Basic Information
Taxon OID3300012997 Open in IMG/M
Scaffold IDGa0157359_1085099 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Botucatu, State of S?o Paulo, Brazil - Atta capiguara ACBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Botucatu, State of S?o Paulo
CoordinatesLat. (o)-22.847Long. (o)-48.434Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036993Metagenome169Y
F091073Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0157359_10850991F091073N/AREQEDWSRLYHKTLKGLETMIDIQRMMKNIKKLAEEANTTITEMESTVLMASINNRVMNVTNITQISEDLRYSVQSDMDERAFQIQRMLADELDHYKGRGNDYVDMNIKEIQELYMTEERKEDKGVIENKEVILV*
Ga0157359_10850992F036993AGGMYQGGPPHEPYFIAIDNKDQVIIGPSKKIVATHVVGELEVL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.