NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0157362_1000157

Scaffold Ga0157362_1000157


Overview

Basic Information
Taxon OID3300012998 Open in IMG/M
Scaffold IDGa0157362_1000157 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20704
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeirao Preto, State of Sao Paulo
CoordinatesLat. (o)-21.166Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002577Metagenome546Y
F026755Metagenome196Y
F039422Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0157362_100015720F002577N/ALVIRGSFQSIDHICFCINREEVNPELLFKVFLGLDKENASVYFLTEHVLGPLGSTTAFEEGKSPENSFFFVVELL*
Ga0157362_100015723F039422AGGAVLYSGHPHRKFKTLIKRSLGSLFFHLGLKSRARTRGVRGSVSTSLLSIVLVSSIVNTVNLFTGDWGALIAGRAMQNSPPLGDKTSLAELHLSMLTDFQLAPPIVLR*
Ga0157362_10001576F026755N/AMCCTPVSGHEVGCVSWSGGSYQDRGPKELSEGVGVGKMRLGPDDVNLQTEELHCNYSVLIVSVE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.