NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157362_1003983

Scaffold Ga0157362_1003983


Overview

Basic Information
Taxon OID3300012998 Open in IMG/M
Scaffold IDGa0157362_1003983 Open in IMG/M
Source Dataset NameFungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7561
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Source Dataset Sampling Location
Location NameBrazil: Ribeirao Preto, State of Sao Paulo
CoordinatesLat. (o)-21.166Long. (o)-47.848Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018112Metagenome236Y
F026755Metagenome196Y
F078054Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0157362_100398310F078054GAGVEGSTLWNSEGSTGSGDEWGCTGVQGVPDWKHVNLLGRPEVKQPIVWSVRGMELLPEEGAADW*
Ga0157362_100398313F018112AGAAGMHSPEGNFTGNDTISEIILFEVPSNRCSSTGGVGVVGRKCPQAKAESKKQCVDPESISVRMGIGWRWSKAYTRGEMRGIQREFGSERADTLRRIGLIVAQTSST*
Ga0157362_10039839F026755N/AMYCALVSGHEVGCVFWSDGSCQDRGPKGSSEGVEVDKTRLGPDDINLQTEELYYNYSVLIVSTE*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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