Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10080073 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2550 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003662 | Metagenome / Metatranscriptome | 474 | Y |
F006063 | Metagenome / Metatranscriptome | 382 | Y |
F035676 | Metagenome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_100800733 | F003662 | GGAG | MKTKQATVVIKGQEWIVLDTDEAKETKVFCKLMSLDGTIVWHTWVDINQIVGII* |
Ga0164293_100800734 | F035676 | AGG | MSREEMKSNFVNNHLRLNGNVHGHKLRLCNKCEEMRPPEGGVQMSAARWICASCWTNRETGRNLKQARDSK* |
Ga0164293_100800735 | F006063 | GAGG | MTDLLTALHLSVLLLDLKIRMMEAIDGGQFDLAMTYHLLILVRTDELAAHKWAMSPSAWKIYETIHP* |
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