NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10080073

Scaffold Ga0164293_10080073


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10080073 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2550
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y
F035676Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_100800733F003662GGAGMKTKQATVVIKGQEWIVLDTDEAKETKVFCKLMSLDGTIVWHTWVDINQIVGII*
Ga0164293_100800734F035676AGGMSREEMKSNFVNNHLRLNGNVHGHKLRLCNKCEEMRPPEGGVQMSAARWICASCWTNRETGRNLKQARDSK*
Ga0164293_100800735F006063GAGGMTDLLTALHLSVLLLDLKIRMMEAIDGGQFDLAMTYHLLILVRTDELAAHKWAMSPSAWKIYETIHP*
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Institute for Fundamental Biomedical Research
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