Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10097832 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2258 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007169 | Metagenome / Metatranscriptome | 356 | N |
F022862 | Metagenome / Metatranscriptome | 212 | N |
F024782 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_100978322 | F007169 | N/A | MSYQTEFDFETPEQKEQRLKDWHDQEAEIDKMFAEDGNYYTYNKYVDKFIDLLPYRLGWGFKNNWYELRWWAKCKYQKFRYGVSDDDIFSLETNIARFIVPRLQYLKKVGKMGIPMKFLPNNYSTLSEEDQQKAEKIAEKEIDRILDEIIFAFDYIIDPDKYVPFPQLSIKWNLKDKNYFNREKTIEEKVVWDEYMKKCNQYNERKKQGLQLFVDHMDTLWI* |
Ga0164293_100978323 | F022862 | GGA | MKFTTEQHNLICQTRDEIRVLNDRQHTLYNNLLKELNISIYAEDWMFDYIYNDSGSIENIEARM* |
Ga0164293_100978325 | F024782 | N/A | MIEQSIERLRAYNRWRTGEDDRTMDEAGIKPRQTTEDIENVCDELEKLISMYASRN* |
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