Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10000584 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34858 |
Total Scaffold Genes | 68 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (54.41%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008752 | Metagenome / Metatranscriptome | 328 | Y |
F011670 | Metagenome / Metatranscriptome | 288 | Y |
F029665 | Metagenome | 187 | N |
F058680 | Metagenome | 134 | Y |
F085689 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164294_1000058412 | F058680 | AGG | MSKAEDQAATDAALAEFLAKGGVIQQLKPNQSGRVEGESYSMWSKKKPSTSPLVNPPEDDE* |
Ga0164294_1000058420 | F011670 | N/A | MEISRAEQSVIKYNQEQYRLDQARLEKQRTDDYAKKIEDRRFEQVVADRVRKNLRLDLDKGRNIDIEC* |
Ga0164294_1000058451 | F029665 | GAG | MKEQIDQFCKNYEIQIVDDQKRRARYYPPKYFTDPLRADVISKDFVEYETEKVFTVQIPESRFQALVEMEQRFFGRHNHGYSDADMFAMLMEKEREESWYRQSTPAVQKAYEQYSIMLNLAGYQRKF* |
Ga0164294_1000058453 | F008752 | N/A | MDLTTQPPAEGILKRSDWGDAITYQVVCECQDADHDHNIWVEADDSRVTVTTYTTQKSEWWKLNRWQTIWTLLTEGYVKYEASIIMTEQQAVNYAETLKKAVEDVKNFKKFSA* |
Ga0164294_1000058464 | F085689 | N/A | MKLTQYGRNKILETFNHWGVPKEFADPMYNYLVHGFSPGGCFTAVLANDFHCAIGSSHPGNSVEAFKSLSGWILEQVPTEARGSYNNVDVWCSLPADVRRTILEDYEIIYTEQQEIMMALQSTPTHEPVLY* |
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