Scaffold Ga0164294

Basic Information
Taxon OID	3300013006 Open in IMG/M
Scaffold ID	Ga0164294_10000656 Open in IMG/M
Source Dataset Name	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013006 Open in IMG/M

Scaffold ID

Ga0164294_10000656 Open in IMG/M

Source Dataset Name

Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32850
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (75.93%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32850

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (75.93%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.008	Long. (^o)	-89.701	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.008

Long. (^o)

-89.701

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F021112	Metagenome	220	Y
F025745	Metagenome / Metatranscriptome	200	N
F028173	Metagenome / Metatranscriptome	192	Y
F070118	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164294_1000065611	F021112	GAGG	LRDISKKVWLHLSAIPRLQKLASDHLAPARSGSGAVSAERSIGINVAALDYSMAKETLDILHGWESMIREARQLTPPALVKAEATTEAEVEATCSFHLAHLDWSLQQDWAKDFAAEVGEIHAKGMAATKQFIEQPRRIPCPTDDCRKFIVIDVENLMDDVSCFGCKESWTVLRLVALAMSNPNKKFYLDVEAIALWLGITQRQVYKIIRANKIERKGSLYDLASILASK*
Ga0164294_1000065612	F070118	GGA	MSYLDFKPVNCRKCGNLVWDGISATSACQVKLDIKRLNLIEEIQALASGIATYQIHRTAGSFEATRRMVPRMGAKDPIVLATHTCYTLTVFAEEPPHYWGSPKLSTTSDEVPF*
Ga0164294_1000065619	F015731	N/A	MGVSMSVEIEKGIVDFDSNIAAWLEQYRNALGQIKQLQEVADVARSHIEAALGDNQIGMYHNKPVVRWSFVESTRFDTKRARELLPPQVIEALEVKSTSRRFTIVNEDE*
Ga0164294_1000065639	F000368	GGAG	MEQMKQIGLSWFRAAAAAAIALFLAGETDLKTLGMAALAGAAGPILKWLDSSAVDFGRGSK*
Ga0164294_1000065644	F025745	N/A	MPANAPTLTVAFGLNGTFTNVSADLILTVDIRRGRMYQDVFIDAGTATVVLNNQSGAFDPSNTSSSWYNTLIAGMQVRISGNSTVIYTGYLEDNMVNQGIYPTVSLTFVDGLATFGKTIAPALATSAYSETAAARATRVLDIAQWPAGSRSLTGTTVMLATGQGISCLDMLEQCANVVGGRFYVSRTGVATLVPLANKFSRPTQLLFSDQGDANSVGYDGIITNPGTDYVYNQAIVDRGPGLLQYSSTFNASVTTYGLKSKKLDAPSNTTTAATNLSLYAARKDADAAVLVEQLDFTPIGIGALATDFLETELNDLVTVKRVTYDGRSISINCVVEGMAHSITSDNWRVSYFTSLVDPYTIAL*
Ga0164294_1000065646	F028173	GAG	MADEVVILNGVKETLTALKDFDKDAVKRFNKVINSELSGAERDAKGLISEDPPMSGWRKADAAKGRTRGGAGWPGWNPAEIKSKITKTKAKGKVQGDYTTSAGALLNKSAAGSIFEVAGRKTKSSMGGGSSAQFLRTLGNRFGQASRVVWRVVDKDKARIEQNVAKALEEAKAELKKHLSRERV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164294_10000656

Overview

Ecosystem & Geography

Associated Families

Sequences