Basic Information | |
---|---|
Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10000684 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 32277 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (73.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004276 | Metagenome / Metatranscriptome | 445 | Y |
F004865 | Metagenome / Metatranscriptome | 420 | Y |
F017302 | Metagenome / Metatranscriptome | 241 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164294_1000068422 | F004276 | AGGAG | MLLREMFSAIGAPTSEQDDVDWTNDLKFFIDNDDAVLKNYFFPAVNRHKEYRGHPDAYKIYMRPLESCKEAYCEKFEIESSEDKFPKEKLIELAKMIATEQEKHMEKGDYDQ* |
Ga0164294_1000068433 | F017302 | GAG | MKIAVGIIAVLLSGCAVMSNPDVEKSISRDKTMEQMAKAALINDMLNSPDPHIRAKGASIAEKFLIKPKQNLFGF* |
Ga0164294_1000068440 | F004865 | GGA | MNNRYMIVTYVLKPNGKWDELTEFKNSIKQKHIQSAKVILDFKEKKCVVNSLNREATFDDMLEMYKRVLGDQLTPHLPKD* |
⦗Top⦘ |