Basic Information | |
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Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10005022 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11407 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (47.06%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024537 | Metagenome / Metatranscriptome | 205 | Y |
F032277 | Metagenome / Metatranscriptome | 180 | Y |
F043787 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164294_1000502210 | F043787 | GAG | MNTTLPSIVEVMATRARATFSHRINFDLIALANLDLMRAWCHEKCTGLWRCESTHALYFQFEESQDATMFMLRWGSAEGNKLK* |
Ga0164294_1000502211 | F024537 | AGAAGG | MNLEQEILERAGKEMAREIDREVLWGMLKAIGWRRVMLDRSTDNNHAVDITHWLKANCKNSFERSGADFIFESEVDAVNFILKWQ* |
Ga0164294_100050222 | F032277 | AGGA | MFNAIGSIMLAGMLAQEPRCVKWTWTGDVYNRRVVCLEWTKPPPKDKDPKKT* |
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