NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10024790

Scaffold Ga0164294_10024790


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10024790 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4853
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F026210Metagenome / Metatranscriptome198Y
F048101Metagenome / Metatranscriptome148N
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0164294_1002479011F026210GGAGMSPILGANPLDYDATYPQVAESANDDAKIFVMERNEGREVMFQIEDGTQYYGRIGYVPNSEHYCVVVDRNGTPWEWYVREEAIHFVEDTI*
Ga0164294_1002479013F066486N/AMKNKTLSKNDPYYLKIGKFKKKSVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEIKSKKK*
Ga0164294_1002479015F048101AGGAGMKKKMKMKKFKTIKDYLETCSEDEKEFIYDIYFDMSVDDLVEIIFGNLPPDDVIQEIEEYREEMEWDDNEAEKSNKSKRKCDCDFVGCQGC*
Ga0164294_100247904F011914N/AMITNNQIKAFDENELAYLYYCCKTEWDSKNMGYEFDWYVMKVFKNNVIHKLLDKYSANLTDENKGLIMQILNKLEQNI*
Ga0164294_100247909F071966GAGGMLSLLGSHIDYKGYIFKPFYLLLGVLYFVVLLALLGSLYVILYIRNTLEIVLKDIEKNRKKYKRLG*
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