NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0164294_10033213

Scaffold Ga0164294_10033213


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10033213 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4113
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014736Metagenome260Y
F016150Metagenome / Metatranscriptome249Y
F036593Metagenome / Metatranscriptome169Y
F058149Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_100332131F058149AGGAMFTPDFYIEMFQTSKRMATNQIFKDERLNKVANDFIDAQTVFAKMMAKNTIEMLSYTVDSMNKTIYPQGEDESVKAKTAKKSASTHTDITQGD*
Ga0164294_1003321310F036593AGGMIQLSFNIVNPRRTNKVWNILWSKYGSITENKAWEFNGYRTGHIINIEFQLTFQGDHAGARLLLGLFGYEVELDFHDTRHWNYDQNTWECYK*
Ga0164294_1003321312F014736GGAGMNTPIAPDSLIKMWCDPRFQMLAVVDKLLDGDKTWAGFEYTYHPIDPVKYRPVAEQVRKALESLKKEYGVEE*
Ga0164294_100332134F016150AGGAMTEEKKKNPIAMALEAKKKSALANQGLGKAPKSQGPKANSKGFGGASVTRRAGRGG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.