NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10036432

Scaffold Ga0164294_10036432


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10036432 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3903
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010161Metagenome307N
F016812Metagenome244Y
F034183Metagenome175Y
F043402Metagenome156Y
F045758Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0164294_100364321F016812AGGAMNTLFPELINEEDEAMFSANLFKLYKLDERCGKLEAPSFRVLYLKDKNTQVHISNHFNSPTCIITYYNIIDKSCIDARTISKKLYNKIHDH
Ga0164294_100364322F034183AGGMNKLKTLAEDINEEEAALLFQLLLSAFETANLQKTQYQNEDLPDESSLMVNVELDTRNVPAAVIEKLLGLLK*
Ga0164294_100364323F043402N/AMIDKFKELVLLLDEKETNNIITLLALLLESWEDDKINLYTEIQNFELTTIYKVLNLFNEQIEDAS*
Ga0164294_100364326F010161N/AMKRYSKLEYLSFKGDNMTRKNKMLYDSLIDYVSYFYNCSDMPDSAKLNALKVFEALLDEKIDVNDFIPVMRQMQFSLDMITA*
Ga0164294_100364327F045758GGAGMIIRELLDLESKVSSVEEFFSLLYNQKIHPSFKVFSDLSINFICLEGMSVYCLELEGAIYFKLCFTDAPFLVYKFNKENDCENVWCLDFELYKAALRSCVKAVDKKYIPVKDKNEKIF*
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