Basic Information | |
---|---|
Taxon OID | 3300013006 Open in IMG/M |
Scaffold ID | Ga0164294_10037106 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3863 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F035668 | Metagenome / Metatranscriptome | 171 | Y |
F059760 | Metagenome / Metatranscriptome | 133 | N |
F068428 | Metagenome | 124 | Y |
F077016 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164294_100371062 | F068428 | GAG | MLEDLQLPKRQTSCRIRTIKADLSDKDKTIFETAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD* |
Ga0164294_100371066 | F035668 | AGG | MTCNNCQDGCKCARVNSVNIFSRDYKAGQAHGQRDEHTRTSDALIELERAGVITNAQMQAVLDLILEKLTDAMDIP* |
Ga0164294_100371067 | F059760 | GAG | MILKTTKILSAKGQTMSNPETKEQLISNTADAITSAIQSSRDNAVEAVISIVESYKKLQLPAIPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE* |
Ga0164294_100371068 | F077016 | AGGA | VPTNNAEQVREFYRKQGEERERTRLIELLKEQKVIRNCGATGKLVFVNCNTLEVLYLKDDLLNEMANE* |
⦗Top⦘ |