NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10183692

Scaffold Ga0164294_10183692


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10183692 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1492
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001897Metagenome / Metatranscriptome620Y
F032155Metagenome / Metatranscriptome180Y
F086582Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_101836921F086582AGGAGGMIAAIQHCHDKSADHSSRIVKDISWFAYVAQMGESMAAEMVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSINPASN
Ga0164294_101836923F001897AGGCGGMAFMDNYEGNKERTDRWLATFPKGRLEAHIIEFNAEKGYVLVQAKAWRDQTETEPAGIDYAYGYLAAYPDKMKRWMVEDTCTSALMRVMALVMGNTEKATKEVMASIKTETPAADYDYWTTKHGDVPSYATAAEAEESGTPSFGSSEDAWVPNAVPTCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV*
Ga0164294_101836925F032155N/AAILAAVYSSMRIIIRSVMSELMPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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