NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164294_10192775

Scaffold Ga0164294_10192775


Overview

Basic Information
Taxon OID3300013006 Open in IMG/M
Scaffold IDGa0164294_10192775 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023833Metagenome208Y
F033350Metagenome177N
F064496Metagenome / Metatranscriptome128N
F101128Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0164294_101927751F101128AGGMRRDSFWFPFEPNRWLANEKLALVSLASKGLWIHLLCLMYKANAGGKLTINGHIPTPEQISRMVGQDAKPLLQELEVAGVYELKDGAIYHGGVASGLAKMEERSAGYARRMSHRSSIY
Ga0164294_101927754F033350GGAGGMSVDVDVPRVKWSMLEWKTMEEKPKNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0164294_101927755F023833AGGAMKSHSDQIQDIINDAMRKAAVLERERCAELVQRLADGTEDQVIQDILNEVVVALRRLSDER*
Ga0164294_101927756F064496N/AFEDINTDKYEPAPKPVKLDTVKSDSISKADLADIAAKLNGVRIGEPRDMELKFGKHKGSTLRQIAMLGDKGLDYLEWLSRQDLKPGADGKPYKNDIIRNEIISEILLEAESLRKGTPDEIPF*
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