Basic Information | |
---|---|
Taxon OID | 3300013012 Open in IMG/M |
Scaffold ID | Ga0169965_1013883 Open in IMG/M |
Source Dataset Name | Gypsum rock endolithic microbial communities from the Atacama Desert, Chile - Cordon de Lila |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Johns Hopkins Bayview Research CORES |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2010 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Chile: Atacama Desert | |||||||
Coordinates | Lat. (o) | -23.53976 | Long. (o) | -68.68737 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018678 | Metagenome / Metatranscriptome | 233 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0169965_10138831 | F018678 | N/A | EEDPLGEGRGEALGRLLEEGGGEGRTVWASFNWVKPVDLETALEQQKGLTELVDARQLVVKTAALEEAIEDWTPSTLRRVQSAHSAIIVASESGLSLSRATPMPRS* |
⦗Top⦘ |