NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164295_10027303

Scaffold Ga0164295_10027303


Overview

Basic Information
Taxon OID3300013014 Open in IMG/M
Scaffold IDGa0164295_10027303 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4368
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041011Metagenome / Metatranscriptome160N
F071220Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0164295_100273032F041011N/AMLVEAEDAEEAVGIVRSAITYAENPYPAWSDWHGGIGEGLAGRWSGLFNGWEENRDVLCYTENKVLADDIIKEFLSYRVSETKVLWEGINKDSGFDVEKVISEYDPYSQRFDDNAMKLWRLQRVAKILNNDWCSDTGVYDLHEHTANLEYFKIRLDKNPEKQYLVPVDFHF*
Ga0164295_100273035F071220AGGAMTNKVKGVVDTVVAVRTTTTTIKNDTKIIALDQTNAKELLEKFEANKADKATLEAQYKSLQAEIYALLGYKKVGDKWIGVADEGTIDGVSVVKVGTQTRTNFDKEKFLQENPELLPLVEAFTSESTNTVLKTTR*
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