NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157563_1102613

Scaffold Ga0157563_1102613


Overview

Basic Information
Taxon OID3300013068 Open in IMG/M
Scaffold IDGa0157563_1102613 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES062 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1155
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047451Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0157563_11026131F047451N/ALAGAGHVIAPNTIRIPINEGLVFNCTWDKTLRMGVHCFGFLCVKGVDKWCAHCIIDEWVCYAKGFGITFEVGLLFPRLKGKGQVNCNKRWKAKNILESLERDLKRYTLYQGETAQSFRHGGTVDSLETGQNLERTMYLAFMKNKTTAQNYAKGLCYLFPKQNWERAGVDTSEIDSVTLALQMQSWRAWKNEGPPLSALV*
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