NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163212_1009077

Scaffold Ga0163212_1009077


Overview

Basic Information
Taxon OID3300013087 Open in IMG/M
Scaffold IDGa0163212_1009077 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3854
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F019290Metagenome230Y
F088510Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0163212_10090775F088510GAGGMSESEILNEVRLSVARIETRQVHILEVLTDHKTKMDRIEADAHGLKGRVWLISTVVFSVLAAAWEVIKNRLLGHP*
Ga0163212_10090776F006138AGGAGMPATTIGQAGLVFGLTSETIGLVQSFSETRNIEKSEVRDNSGDIKAVAYYNPTTAYSLSVAITGANTSITVGGAFAMVNASTAGTLRVDSLTINKTNDGFVTLDVAATGYPNVSLS*
Ga0163212_10090777F019290N/AMEGGSYWGTTNIKVASAVAAFGGKLRTSDPVTHVIKEDGSRQVTFWFESGAGGLIKSEMEAKWHEMKSEPEAAVRYVKAALENRETLLGLVKRAEPIQVIQKGGQTLLVPLNAKPELKKAILKAI*
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