Scaffold Ga0163210_1091763

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163210_1091763

Scaffold Ga0163210_1091763

Overview

Basic Information
Taxon OID	3300013091 Open in IMG/M
Scaffold ID	Ga0163210_1091763 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_220m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1098
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-2.0288	Long. (^o)	29.1756	Alt. (m)		Depth (m)	220
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021459	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163210_10917632	F021459	AGG	MSMPEEETVKRALDELHLRVSESAKGEHLPPVKALPNGNNVVTLKCTQGSVSYEVEIELTKRGKFVDLRTK*

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