Scaffold Ga0164296

Basic Information
Taxon OID	3300013093 Open in IMG/M
Scaffold ID	Ga0164296_1000019 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013093 Open in IMG/M

Scaffold ID

Ga0164296_1000019 Open in IMG/M

Source Dataset Name

Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	201094
Total Scaffold Genes	205 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (37.07%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

201094

Total Scaffold Genes

205 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (37.07%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009453	Metagenome / Metatranscriptome	317	Y
F010014	Metagenome	309	Y
F012753	Metagenome / Metatranscriptome	277	Y
F014946	Metagenome	258	Y
F015306	Metagenome	255	Y
F018866	Metagenome	232	Y
F022821	Metagenome / Metatranscriptome	212	Y
F024038	Metagenome	207	Y
F025447	Metagenome	201	Y
F034484	Metagenome / Metatranscriptome	174	Y
F046855	Metagenome / Metatranscriptome	150	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_1000019125	F025447	N/A	MNSLNNIVNSANNAVAPAAAKTAPQQGTESRTSILPSMIPSGLGFFGSSYSPADAMLTPNQIGVTVGSNISDVVSAVKGVGFYGDQIGFGSPSTGLTRGMDLRPLGVNYFIKTGVKCSNGADMWHYMQGITQGDALGEKMKNVMADMGMPPLQGLAPGMIEDAEHALNPAPLMNALFGSGYPQCKLATLPVGDSYGNIADTTTGEPWISNPETARQEGGGWVQSRWIQDTDRNGNPINLSRDQWAEAPKTYNPDGTPVQSEGFEALTSPVTIISVGVLCLLAFAVVRKR*
Ga0164296_1000019140	F022821	GAG	MANYIVESEFIIRAVDKPFHQRNTLGVFQSSDMAYQFIEKYLADTKELHTYFARQMMCSRDEYEDYIRSERIVAFNIVLGQFEDMIYVRKESA*
Ga0164296_1000019153	F018866	N/A	MDSKAERHVTLKKGSIDMDGNDAFKMLLEDSAREAYLRPWHRLERGLRLNRIRIFIEEIAPQYEMTKEDRDKFFEFLLKALDKKLLNTLKVVQYDQDTQRIVTIRGLEIKRNAEGILKWAFSAKKIKTEGTRKKKKEELPSVSTEIKPVESDKIEE*
Ga0164296_1000019155	F010014	N/A	MARTRREVDPIDAINARQFEHWQTSGKGGVTNRPDPNKQAPFYDMAPNTSRTTDRNYRSQPRYDVEGSKGGSNSFFDKYDTSSDARNMTRELRASVYEDKNNGFTAESQKLLQRNFDNRWLNPSVAEQQAKAAEELRPKMDDIRLFYLNKSLPETKK*
Ga0164296_1000019162	F046855	AGGA	MSLPAALAGQSSMASMVAISPMDGFLQIFNNNPYFIGVMMLILNLGGRFISMEVTKKQELFFQHPWVRRILIFTVLFVATRNLWVAFWTTVTVVLFLGYLFNENSALCIFGQLGANGSTCSDSPKPGEGMTPEEKEILLRLSSKAQKYAVAEESAKGVKKTPEQAALSKGIRATGAVHDADEEDDVLHTDIYAANLQVLKN*
Ga0164296_1000019188	F015306	N/A	MSQSIHSTTPQFEKKKVPRFHRLDNDHISAIESLFKKFPFLRDRMEIHMPFHRAKPTFSSGTVWLWPKFDKRPVGYLIFLEGFAPCIWYPERQEGMTFRWLLPPSFCQNGATVCLANILAGESLLQIEDIVIDHGVDLWSTQVFSERWKKLSSFWQSLPPDQPLLAFKPQVVTPIPLHEWSNHYNSAIYWIIQSDHAKQPRWYWKDTVTVPDRKPVEYIAPVLKRSNDIATILCAYCVPYTKSMLPDTYTLSSQDHTSLGLASIPTLQLSMELRSRFAEKIDGLPVEVTWNEDFKKYQIVRILPKDSPITTASFFYHI*
Ga0164296_1000019202	F009453	N/A	MATAGTLLADLDGRAPVVNKDDDLVNKILADMNLPSPSNPIMNNVPPPSGNGNRMIQAPNPNSTYPMSMDPATATAHMIGKEYPSTADFANMMHSPSYSHGGSMYASVAPQIMQPAPTLIENTKGNFYTDIISQIKQPLLVAIIIFLVSLPILNVLIGHYLPSLLRIGGDLTTVGLAFKSLIGGFLFWFIQKILVPLMAV*
Ga0164296_10000194	F034484	AGG	MENEVPYQFITTMLIIAVIVFFVVKFMNSTPSYDRMNEGFYGGVAHGSGHPDCLRTLPEGSQLLDIVASANNVPAGVSDASADYKEMELILSKLACLKKDLLSPSGIVEATRTQAFETAHDRMNTGEICAMCLNQSIAARDLDIIFATWRDRGRVLLRKLCTEANLSEIQSVEVEKLFKKAWEDVYDVATSRCLKTDYSKQNGGSTEGGNVGGVEPPSLKDLGTYDYKYGGVSASGWNGVV*
Ga0164296_100001955	F014946	N/A	MTQPCSYAWRGSSGCGKRTKLIQFLQTQAAKVGIPFEIKQSTWFLNKQVNGGDPDEDDDDATGKSIPYEESHLHLGFDVARMSMSDKVFLQSILTRWTGQQDVCLMASAIQTRYLVLYHAQFLTDESVLQLQECLEQYPTFAILLTTEFPLCGRLRDFCFEIPVAGYDHLLEQYTKRAQLTETDVWLSFFKKTLNEWSENWSTDGGASKITDVRNWIYICLQRNLRWTDVLMYWVITIYDTDWITPLIRKELLDIIWHAESGSGWVLVTSYRIPILWEHVHLKLARQLHILREKITSQ*
Ga0164296_10000197	F012753	N/A	MAEANEVSEALTTPQENEIAMLTHSIIEWRRLKEENDRRKQEMREANTKMKALEDIIVRVMKSHNIGALDLKNSGGRVLFKKSKHKAGLGQKNMEKLIAEHLESQEKAINLMKYIQEHREVVIKESIAYEKSS*
Ga0164296_10000198	F024038	N/A	MDPNTILYELWYSIAESLFQKVCEVTDLTDEQREALRAVALRPNDFQLQIEP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164296_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences