NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164296_1000048

Scaffold Ga0164296_1000048


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1000048 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151369
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (76.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F023777Metagenome / Metatranscriptome208Y
F029334Metagenome188Y
F090382Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_1000048120F023777N/AMAVKSWYLSIIDSSTHKPVLHKMFFTAPVMNAFIKEQEILEKYPKPQYYIVKENY*
Ga0164296_100004813F000652GGAGGMKTVRVETLLTQELEVPDNWEREDVFDFLAENQSFRTAFQGVSNEEQTARIVDLGVVEEKVTEMGEEAYDE*
Ga0164296_100004822F090382AGAAGGMIRIAPTLNPLEVMLVAAHYEERGVEHYTLSQGNDCIWAYYGAINEYFIFRDGKIVDIQID*
Ga0164296_100004823F029334AGGAGMKELDTKEAGGFAFAAAMDAQRRNSNNRSTYSIEQQRKAITARDLLDTAFSYSKLYINYRKKFIAIKAEGARAKDAMAKQVICLFEANGYGVVSTPQGVIIRIDKR*
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