Scaffold Ga0164296

Basic Information
Taxon OID	3300013093 Open in IMG/M
Scaffold ID	Ga0164296_1000053 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013093 Open in IMG/M

Scaffold ID

Ga0164296_1000053 Open in IMG/M

Source Dataset Name

Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	141991
Total Scaffold Genes	130 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (36.15%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

141991

Total Scaffold Genes

130 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (36.15%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009382	Metagenome / Metatranscriptome	318	Y
F014946	Metagenome	258	Y
F015306	Metagenome	255	Y
F025447	Metagenome	201	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_1000053110	F009382	AGTAG	MDNGFTRDTSPNLFSSPSLGSEYRGAHQAAIPSAKNIFPARDSRYPARAAALDDGRLVTDYRPQCSKNIRVGQQFHTKKWMISHAEELMHEARKRQVEWSGASLPMANTVPPPAAIVRSTPFYSEVNPTHWKGGVGVERANAASPDLFGTFTYAPSISEIQNNRKNISMTTREEGGRNSKRGQF*
Ga0164296_1000053129	F015306	N/A	MSRSISNTTPHFEKQKVPRFRRLDNDHISAIESLFRTFPFLKERVEIHMPFHRSKPTFSSGTVWLWPKFDKRPVGYLIFMDEFAPCIWYPERQEGMTFRWLLPPTFCQKGATVCLANILAGESVLQIEDIVIHQGKDLWSHQPFSERWNALRSFWGSLPPDQPLLAFQPQIVKPIALKDWNLHYNSAIYWIIQPDHSRQPRWYWKDTVTVSEHAPVKFIAPVLKRSQDMVQTLCALCTPYTKSALPDTYSLTAQEGESLGMASIPTLQLSQELRKLFAGKTSGLPVEVEWNENFRKYQIVRIMPESNPITTASFFHHASF*
Ga0164296_10000535	F014946	N/A	MDQPCSYAWRGPKGCGKRTKLLSFLQQQAEKAGVPFDMKKSTWFLNKQTNGGDPDEDDDDASGKSIPYEESALHLGFDTATMSMSDKVFLQSILTRWTGQQDVCLMASAIQTRYLVLYHAHFLTDESVLQLQECLEQYPTFAILLTTEFPMCSRLRDFCFEIPVRGEDRLLANYVDRAKLCTEDVWLSYFKKTLNEWSLNGEPSKIADVRTWIYTCLQRNLRWTDVIMYWIAAIYETEWITPTIRAPLLHTLWNAESGSGWVLVTSYRIPILWEHVHLRLARQLHQLRSSK*
Ga0164296_100005369	F025447	N/A	MAPSGIGFFGSPYKPADQMKTPPQLGIHVGDSMSDVVNAVKGVGFYIDQIGFGSPSTGLTNGMGLKPLGVNYFIKTGAQCSNGADMWNYMQGIPEGNVFGDKVKQAMADMGNPSLRGLAPGMLEDVENGLNPAPLMNSLFGSGYPQCKQVTLMVGDYEGHIADPSTGEPWISDPETARRSGDVYVQTRWVQDTDRLGKPISLTRDEWVAAPKTFNADGTPVSEGFEQVMSKPATIITVGVLCLLALAVVKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164296_1000053

Overview

Ecosystem & Geography

Associated Families

Sequences