Scaffold Ga0164296

Basic Information
Taxon OID	3300013093 Open in IMG/M
Scaffold ID	Ga0164296_1000276 Open in IMG/M
Source Dataset Name	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013093 Open in IMG/M

Scaffold ID

Ga0164296_1000276 Open in IMG/M

Source Dataset Name

Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64479
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (62.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

64479

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (62.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028168	Metagenome	192	Y
F042147	Metagenome / Metatranscriptome	158	Y
F053029	Metagenome	141	Y
F071905	Metagenome	121	Y
F086508	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164296_100027616	F086508	AGGA	MSFSDLKLTDLRKVADSFGVDAAQSKTKQEVIALLEEEGITYQMYAKFTESEKEEIKITEFEKKAREKKILKTTNSVLVKMERNNHSFQVDGYTFSQEHPFVAMPESDAQRIFDTQTGFRLATPREAQEYYA*
Ga0164296_100027617	F053029	AGGGGG	LQTINTNSQEKIELQVYIEGVLSQADSTPTLSIYDADNDASPISGFDNITSYDEDPAGIYSFLLTPLITNINRVLEVKWNYTVNGVPVVQTDFYQVETPYATVSETVDFLQFGSEPFEPNFVDPKAIVSAEKVARTIIEGYTGINFYTYYGFQEVYGIGANTVQLTEKMLNVDQIWENQILVYDGTQDPIYNTFGYNTELSPSGYQLRIWYPAFPDGWNNEMDPVVYESGRFRDQYLYRFVGQIGYKYVPEDIKLASMLLINDILSNDYNWRNKYLSQVELSEISFKMAGGAFNGTGNITVDNILDQYRKTNIVII*
Ga0164296_100027653	F028168	AGGA	MTDKPIIDLISELTEFNDMKSYMNDADLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALSAKFAIMSRYYTTFEKGGENAKKKNVYYTAEEAINRLVDALKYSARYGA*
Ga0164296_100027657	F071905	AGGAGG	MAKSTKLWESKDWMYKRYVVEKKTVLQMAMEARCTHMTIQRALEKFDLIKKPRKWTK*
Ga0164296_100027665	F042147	AGGA	MLADGTLSTIENEDDIYISLTQLCEYFTTASINIKREINNVHPSDRKYAAGMQDMMFTIAQELLELGKFEAQRRMIDSPEDLLKMIDKSKGNSVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164296_1000276

Overview

Ecosystem & Geography

Associated Families

Sequences