NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164296_1000999

Scaffold Ga0164296_1000999


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1000999 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31650
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (81.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021093Metagenome / Metatranscriptome220Y
F032163Metagenome / Metatranscriptome180Y
F062705Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_100099921F062705AGGVKKENNVSDLRLVQVFLSQTQNPGPGIYEVSSNESGDLFCTCPGYRARSVCKHTKFVNARIDSNKGHYPLEISSRATEEDTDKAKRSNQDFREFVIRFGKIEVY*
Ga0164296_100099928F032163N/AVNDDLIDSTFADLDDYYPGSKRKRKNIEPKKPEIELDTSWDSKPYIKTLPNGKDVEMFTIGALAAALGRPVITIRTWIKEGYLPASPYRLPAKKDVNGEDHQGRRLYSRAMVEKVIQLFDSTGVLYLKRIEWPMHRQLSNEIAEAWSQIRAEETK*
Ga0164296_10009996F021093GAGGMGNGFIVAEDLALKTLLSGITVSDDSNASRPVKVWFGYPDLEIRDQSFPFITIDLIDILQAQERQTAGTLVDSDYQGTIASQAGYGYSYNIPVAYDLVYQITSYSRNPRHDRAIIYQLLNKFPSKYGYLTVPNALGTENSVRSMFLDGFVKRDAVASETGNRRLLRNVLSVRVVSEMTPAQVAATPLVDYVDINATTSSIPSTLTPVPPNVNP*
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