Basic Information | |
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Taxon OID | 3300013093 Open in IMG/M |
Scaffold ID | Ga0164296_1039395 Open in IMG/M |
Source Dataset Name | Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2440 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009462 | Metagenome / Metatranscriptome | 317 | Y |
F067423 | Metagenome / Metatranscriptome | 125 | Y |
F070810 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164296_10393951 | F067423 | N/A | KVLNIPERDVILEHKHPKLKELYDAYINALGKYRTFEAIKGDEDAS* |
Ga0164296_10393952 | F009462 | AGGAG | MQVEQLHESVKDTYKEMVIKEHEGFRLVLKKHEVISPKGLFALDLEQQHLKDGEIVNSCTYNFFMDKEELQVLASGLTA* |
Ga0164296_10393957 | F070810 | AGG | MKELNSVWEIRLNWYNQDKYWWNQVCADVVEVFGLPGDRFTSHPHEDCMLFRFRSKKDYNLCKILLSDKI* |
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