NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164296_1043064

Scaffold Ga0164296_1043064


Overview

Basic Information
Taxon OID3300013093 Open in IMG/M
Scaffold IDGa0164296_1043064 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2277
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037070Metagenome168Y
F082681Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0164296_10430641F037070N/AMGTPFEKGSPTESYPIQSSATNPFFPAVCVRSHWDPTKIYARTVPTSLVSLPVDFRPYTKVCLEYRTTAPEQKAPEVPNDLVFPGGGEVYPPTRYLNNIDDESRLRRLDRPLGTCDAEQFRANQKGDMYVDRILVPPATRPPSRFVEEISMPQALLRSGPYHCRAEADQRNWDRSSRLFNNATKQDRYKAPAEPPRQNIWGDARRCPDITVGTSELNRASGCAWNPSKDTVDSMARVNQVDGPTK*
Ga0164296_10430642F082681AGAAGMIEWIVILLIIFCITVWYYTQSVAEYSLSQIKESQISTQLAQVWEERKPIVISELRARGLWVADGLRQTRFWGAQPIWETYEKNPGSQIITDRAQQLTWAEILGISQIESDTLMNWFNVSSMIFSTRTEAHIGPEGLRQTYGWATTIACTDGEARCIMIHSAQKARLPPGWLNLRWVDATVAHHPLWTQVQFIEVILRPGTVLVVPPHWIVAMEPKEPSRPIWWVRSDLHHPISSWAQRWNEG*
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