NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164313_10000009

Scaffold Ga0164313_10000009


Overview

Basic Information
Taxon OID3300013101 Open in IMG/M
Scaffold IDGa0164313_10000009 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105424
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040632Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0164313_1000000958F040632GGAGMSHRTHEAASHEIEIEDLRDPAAIPDMVHVVVASREEELLWAVFDGFSELPTVRVTGCSTLPQTRQICAADPPGYLIIDMTLLDHEPMDLITLANLSKWQTHIVALTDHPVFEIGARFGKARLTFLQKPVSAHDLLLLLRLRIGDHDEQQAEVC*
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