NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0171651_1030182

Scaffold Ga0171651_1030182


Overview

Basic Information
Taxon OID3300013115 Open in IMG/M
Scaffold IDGa0171651_1030182 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1776
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090233Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0171651_10301823F090233N/ALLDNRRVVNNLEIDIHFRHHADNGEAMIHENEFRSRPRKFRVIIDPYKVRVDDYGRELEDEEHANEMFKVLGHELVHVKQYVVGDLAMKAKGMYWKGELTDVKSMKDYFKSPWEVEAYGLERYLWLNFIDFWTSEIENNDLFKDCLD*

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