NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172367_10007820

Scaffold Ga0172367_10007820


Overview

Basic Information
Taxon OID3300013126 Open in IMG/M
Scaffold IDGa0172367_10007820 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)12127
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameDemocratic Republic of the Congo: South-Kivu
CoordinatesLat. (o)-1.64Long. (o)29.05Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005346Metagenome / Metatranscriptome403Y
F014007Metagenome / Metatranscriptome266Y
F028788Metagenome / Metatranscriptome190Y
F046242Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0172367_1000782011F046242GAGGMARTTFSGPVKSDNGFEGNLVSGTISSASGVITNLLCTTLTIGSTVLTTGSVSGTVSVQAGRIPVLIGSTTLYIGLYASLVP*
Ga0172367_1000782012F028788AGGAGMGMQTDVLASKVAVAAGDMLDQNSLVIGRARVKAIYIVPDEGAGTVTFLDGGASGATKIVVNTLANSTSPDYILMPGEGLLFQTSIYIVPSAVVSTMVIYG*
Ga0172367_100078202F014007N/AMQDVLIPDIEENIPLPANAAEALPDLSAEQEIEMRARTIRLVSDLTGTPLLPNEEDMEQAKDLARAQLHDPRTRVDYSKYSNETIAMLAGIAARYNHMIVDDLAELKLYVVNKLFEAAEQADTVKTRIQALTKLGEVDGIDAFKKRSEVTHVIKPIEEVEKELLSVLEGIEYRVVDENAAKPDQI*
Ga0172367_100078205F005346GAGGMGYSNALEYLESKIKEERTLIVDTLIQGKLDEGEYKRLCGALQGLDLACNHIKDLAKRMDEE*
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