Basic Information | |
---|---|
Taxon OID | 3300013131 Open in IMG/M |
Scaffold ID | Ga0172373_10107864 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2082 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004233 | Metagenome | 447 | Y |
F005480 | Metagenome / Metatranscriptome | 399 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0172373_101078641 | F005480 | AGGAG | MANTTNFNWETPDDTDLVKDGAAAIRTLGNGIDTSFVDLKGGTTGQVLSKTS |
Ga0172373_101078642 | F004233 | N/A | MTLWTPDWRILVNGDELTSVILSNLTITSGRQDINSPTPAGYCSLEVINTDGTNYAFTINTPVTVEIKDTSANYVAIFGGRISDLRQIVRSAGSSAVITSLRITAIGALSRLNRAIFDGNLAEGLDGAQIEDLLDDLLLNSWNEVPPAETWATYDATETWVDAQNIGLGDIDAGEYTMVSRQITDSVIAPIANQIANSALGYLYEDANGLIGYADASHRQDYLINNGYTDLDASHAIASGIGVIQRQGDLANKIVMDYGNNFNNSYTAEDTDSQATFGLFAEQFNSYLKNAADVEDVADRLITLRAWPRNTFQSITFPLQSPEIDDGDRDALLNIFIGQPVRITNLPLNILGGQFTGFVEGWTFNASVSGLSITFLATPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS* |
⦗Top⦘ |