NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116697_1040214

Scaffold Ga0116697_1040214


Overview

Basic Information
Taxon OID3300013134 Open in IMG/M
Scaffold IDGa0116697_1040214 Open in IMG/M
Source Dataset NameBeach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Source Dataset Sampling Location
Location NameUSA: Municipal Pensacola Beach, FL
CoordinatesLat. (o)30.3262Long. (o)-87.1745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028441Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0116697_10402141F028441N/AMTLKQLIKLEDKANEVWVVSPTLHYDTENKDFSELVSVNLGEKTKYRYIVPSTPTVHKHLKAYKKMYNMTDGEMIKNFCILPSSEFTPFIQEIAIYNASTDCVACAGSSTEDTNDVIKFAQDHAKEMALAFKRIWRKYKLCNP*
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