NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116697_1153490

Scaffold Ga0116697_1153490


Overview

Basic Information
Taxon OID3300013134 Open in IMG/M
Scaffold IDGa0116697_1153490 Open in IMG/M
Source Dataset NameBeach sand microbial communities from Municipal Pensacola Beach, Florida - OS-S3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Source Dataset Sampling Location
Location NameUSA: Municipal Pensacola Beach, FL
CoordinatesLat. (o)30.3262Long. (o)-87.1745Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042907Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0116697_11534901F042907AGGMMTDEMLAEAEEKLFNDLRDEPCIVCGDPYMYVLGSYTPEEPSEAPKRGDKAPVLYYTLCQKCFNNGRIPTARIEAVY
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