NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116836_1005042

Scaffold Ga0116836_1005042


Overview

Basic Information
Taxon OID3300013181 Open in IMG/M
Scaffold IDGa0116836_1005042 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F057435Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0116836_10050421F057435AGGAGGMHKNIERQILLFTEATGLTKKAEVVHGTLFVKFNNPQDKWWFRRALRNFCRIFINRDTGINANDVGDEYAYDIVPEKDEKNWNRTEPLASQVDTMLELAGEMTEGK*
Ga0116836_10050423F004368AGGAMGTRLAEIIMDRHEDFLYEDSRAMKLTPYVMAERCLQAELTAIFLDGKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEVNWYEWYESAQLYTEVYEEDPIHTLEEETV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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