NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116836_1009541

Scaffold Ga0116836_1009541


Overview

Basic Information
Taxon OID3300013181 Open in IMG/M
Scaffold IDGa0116836_1009541 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 9m_Station6_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)880
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F029123Metagenome189Y
F053632Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0116836_10095412F029123AGGAGMKYEVWFGQNGKWFGYHSFKHKMDAERYEERYKKVFKDLTVEIRRKEYGYC*
Ga0116836_10095413F006217GAGGMIELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQELRHAQRKLEVERLRQFLKDNPHYKYPGMALPNGKIKPLDVCWGSAKTYGTNKERRC*
Ga0116836_10095414F053632N/AVNTEEDGGYNMKLYKNSEGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYPSNDKEFEPVYAPDTDLDKKALSYFEWGYDKLRSGEFADGTEFIRKALLYQKTHNIHEEVS*
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