NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116815_1000012

Scaffold Ga0116815_1000012


Overview

Basic Information
Taxon OID3300013195 Open in IMG/M
Scaffold IDGa0116815_1000012 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20014
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025308Metagenome202N

Sequences

Protein IDFamilyRBSSequence
Ga0116815_100001224F025308GGTGGMISDDDFKFLLYQSRDAFKILEIGTGTGKSTAALRLNNSDVYTIDRNDIFEYNGLNVHKFICESKEYWKDHTHDGFDFVFVDGSITKLDCEEILKRTKDSFKIVFHDYMPNEDKDPGRNKGWYNMKVFKETALLNYAITEQLGGSHCGMLVLKKDK*
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