Scaffold Ga0116815_1000500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116815_1000500

Scaffold Ga0116815_1000500

Overview

Basic Information
Taxon OID	3300013195 Open in IMG/M
Scaffold ID	Ga0116815_1000500 Open in IMG/M
Source Dataset Name	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Institute of Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4517
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location Name	USA: Gulf of Mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085235	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116815_10005009	F085235	N/A	MEAYLTPERETILKLLEVAGIEIVEDKPVCRERGSKYAGFTFSIPSTQTIEIVVCTEVIKEHFSGARAIMEINRTVDHEALHAAQFCKNDYSPGSVSDDYTTDNELEAQSYEDRPQAVGEKIIEFCF*

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