NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116815_1007278

Scaffold Ga0116815_1007278


Overview

Basic Information
Taxon OID3300013195 Open in IMG/M
Scaffold IDGa0116815_1007278 Open in IMG/M
Source Dataset NameMarine hypoxic microbial communities from the Gulf of Mexico, USA - 10m_Station7_GOM_Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location NameUSA: Gulf of Mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004368Metagenome / Metatranscriptome441Y
F004819Metagenome / Metatranscriptome422Y

Sequences

Protein IDFamilyRBSSequence
Ga0116815_10072781F004819N/ADKNPMLDERSARFHARVLKEDLATLPFVLDTCNRDINIARATNYVTWDHGKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGN*
Ga0116815_10072782F004368GAGGMGTRLADIIMDRHEDFLYEDSRAMKLTPYVMAERCLQAELTAIFLDGKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEVNWYEWYESAQLYTXXXXPYEEDPIWQITERLKENFDRTGRTHG*
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