Scaffold Ga0172421

Basic Information
Taxon OID	3300013212 Open in IMG/M
Scaffold ID	Ga0172421_100310 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	BGI Tech Solutions Co., Ltd.
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013212 Open in IMG/M

Scaffold ID

Ga0172421_100310 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Saiful Muluk Lake, Pakistan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

BGI Tech Solutions Co., Ltd.

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16738
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (46.15%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

16738

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (46.15%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location Name	Saiful Muluk Lake, Naran, Pakistan
Coordinates	Lat. (^o)	34.8762	Long. (^o)	73.6934	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saiful Muluk Lake, Naran, Pakistan

Coordinates

Lat. (^o)

34.8762

Long. (^o)

73.6934

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F011760	Metagenome	287	Y
F039635	Metagenome / Metatranscriptome	163	N
F053301	Metagenome / Metatranscriptome	141	N
F054860	Metagenome	139	N
F076096	Metagenome	118	Y
F095470	Metagenome	105	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0172421_10031013	F053301	GGAGG	MTVKEVIDLLETIAQKEGYNTECIVEIEEQNYNTEAKVHTVCTVGYQDGTKKICLLGIKGEESDEE*
Ga0172421_10031015	F054860	AGAAG	LNISLKNTRINNLNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVSQFREWCSIQPPVYDPHSGNTYKFDADLYVNDCLTEYIGNQYEVAVS*
Ga0172421_10031027	F103253	AGTAGG	MEEKVWIYLSKTGTGFQLAGADIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIYGNYQRQNILTGFAKNVDIPENLKKSISENYTFEEEEMERAIS*
Ga0172421_10031031	F095470	N/A	MRVDMKKVMWVSDSLEPWNHSHHYEPLIEDLTGFNLTENLCSQTVKYMAKRLNDTPYQRRFRTKYSIFENEYVALVEKFNIQADNNGKIEVK*
Ga0172421_10031033	F011390	GAG	MMKIQTTNYGLCSVKKHKYQTNGNLALSLIDEDGCPVTYISTNVFPMGENEFCANYYNMGATLWNDIANSGLFEQTGEKVPSGYCEYPVCKLIVDID*
Ga0172421_10031035	F011760	N/A	MENTTTQRMVLRVRIQDVSDRSSAIEYVGQGTWFDGKPYIVTRYKSSQTNFYFFVYDSFVPEYNYFDAIIGKEIWDLNPEHGNHSGKTFIYSTMLDKMYDPYAMSSVLNSPCCLFEIM*
Ga0172421_10031038	F076096	AGGA	MIWYDKQWENPLYWFDKMLTYSGHARLRTLERNLPFVDFLPVDSKYLFHIRKKDVFSMTFKTTVKGKRMEIAINSIGVVMTVYPVINSTADKFQFKYKQYLGAFKKPDDYMPPIIIESDLSGEDCIDSELFEEM*
Ga0172421_1003108	F039635	GGA	MTQTQAEKLKIKVEAFNELYAPITLRFQMFSTSETNWAVTITYNYTPEEWMTFVSLDSNYNHVNDRLSGFQFGIEAVEAYQEENGNLKFSHSDLPLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0172421_100310

Overview

Ecosystem & Geography

Associated Families

Sequences