NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172421_117126

Scaffold Ga0172421_117126


Overview

Basic Information
Taxon OID3300013212 Open in IMG/M
Scaffold IDGa0172421_117126 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Saiful Muluk Lake, Pakistan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBGI Tech Solutions Co., Ltd.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15090
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Saiful Muluk Lake, Pakistan

Source Dataset Sampling Location
Location NameSaiful Muluk Lake, Naran, Pakistan
CoordinatesLat. (o)34.8762Long. (o)73.6934Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F006623Metagenome / Metatranscriptome368Y
F039641Metagenome / Metatranscriptome163N
F049628Metagenome / Metatranscriptome146N
F050378Metagenome / Metatranscriptome145N
F059968Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0172421_11712614F049628GGAMKFFEVMQPLMHGKPITRSSWEHEVYVRYSDCFEAFVMHTDGESKTLQGLTLDPETMFADDWMWGEFHPVKDEIKWTQTKS*
Ga0172421_11712615F059968AGGMKVAKNTDIEDRTALLVRIKNLRAAGHSISRTAQIMCMTRGTVQRWINEDQPDRIVKKMNPYVSIDEKIAIVVKWAELIASGVSRSDAAASVGFPTMMLNRWLMSEPSLRVEFQETVGKKQNNTGRKSFETIMTDVRAGRPVWRDGGRFKLQLVEAALMRYELDGANVWRCKGFATLTGTDVLARDWTVVL*
Ga0172421_1171262F006623AGGTGGMNLQNYRLEPNPNTPGDWIVFGDIYDNDDNLIGTYGPDGTSMFAWWVTQDSNFQFNYAVQFSQIMAQEIADGVAE*
Ga0172421_1171263F001733GGAGGMSSISIGRLVVVVLIAFVASFSTVFGDGIRTAEAKDIAELGAVMTLYGSKAVAAGVTAAMSAALGFLTMPFKGVQANSLKVGK*
Ga0172421_1171264F050378N/AMIRVLRGVCMSLEMWVQIGIQAVITTVSIGAAWVALQVRLTRLETQVAHIIDTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR*
Ga0172421_1171265F039641N/AMIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWIQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYTYGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG*
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