NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170573_10198417

Scaffold Ga0170573_10198417


Overview

Basic Information
Taxon OID3300013232 Open in IMG/M
Scaffold IDGa0170573_10198417 Open in IMG/M
Source Dataset NameSediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA ? S1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, Davis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment → Sediment Microbial Communities From Acid Mine Drainage (Amd) Holding Pond In Pittsburgh, Pa, Usa

Source Dataset Sampling Location
Location NamePittsburgh
CoordinatesLat. (o)40.44Long. (o)-79.99Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103138Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0170573_101984172F103138N/AINVKMKGTILLNYNENTRQVAEEEKSRFLKSLLEQMGVPIAEIWTEDRPLSVEKKIKLRTILAAYSVQIIDDLDGSLQIYVEGERVAEWQKCIYKLKRDVSQIDPRKQLYLEMEVNCWSLFEESEQQE*
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