NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136642_1002868

Scaffold Ga0136642_1002868


Overview

Basic Information
Taxon OID3300013285 Open in IMG/M
Scaffold IDGa0136642_1002868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6582
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location NameUSA: Lower Cathedral Lake, Yosemite National Park, California, USA
CoordinatesLat. (o)37.8453Long. (o)-119.4233Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059964Metagenome / Metatranscriptome133Y
F090389Metagenome108Y
F097335Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0136642_100286812F059964N/AMNNKMTNEFTDRAYNTARNERPVYVNFSATKMSNAVKPNSIVYFKDFMGRQHKVVCRNKPEIKKACEFFSMLKAESAQITRIINSYPMSYGQVTKKFIPAVKRELKAMGLSSKQVENVLIMYWA*
Ga0136642_100286813F090389N/AMTIKQFQRKDALRIMNWCKRNVGLNYRRHTLPALEWHSVSEDKDMGDYDFEDNIMSVYKNNHTSVIDIIHTIIHEWVHYKQSTKKYYEYSEKYNYQDNPLEIQANELADKMKWQCRKDLFR*
Ga0136642_10028689F097335N/AMSKELSNEQQAISQLYSVLVAIVASDRTPKHTAEATIQTLEKLFNDENGPFQSTDELIGMTMAMGEAMNDVVKQRNKQITRASQGASILAQYGLN*
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