Scaffold Ga0136642_1075403

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136642_1075403

Scaffold Ga0136642_1075403

Overview

Basic Information
Taxon OID	3300013285 Open in IMG/M
Scaffold ID	Ga0136642_1075403 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	891
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From High-Altitude Lakes In Yosemite National Park, California, Usa

Source Dataset Sampling Location
Location Name	USA: Lower Cathedral Lake, Yosemite National Park, California, USA
Coordinates	Lat. (^o)	37.8453	Long. (^o)	-119.4233	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136642_10754032	F005200	GGA	MDPITIFAACKAAHAGIRECIDLYQDFKKDGKDVGDIVGDIGKNLGAFFTHQESFKEAEKEAKKNPLPKNVSINEEAMNRILRQQQIEQMETELREMIIYQVGMPGLWSKFTEMREIVKKEREKVEREQKKPVKTPLIKGVNLLPNGNFGRQSASQFFRGLWSLAY*

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